STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2432Conserved hypothetical protein. (368 aa)    
Predicted Functional Partners:
MCP_1712
Putative amino acid-binding protein.
 
     0.681
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp).
  
    0.651
csd
Putative cysteine desulfurase.
       0.640
MCP_0267
Conserved hypothetical protein; Contains one Phosphate acetyl/butaryl transferase domain (IPR002505); Similar to Putative methyltransferase mtx subunit X in Methanosarcina barkeri (strain Fusaro / DSM 804) (O32853).
  
     0.627
MCP_1713
Homoserine dehydrogenase.
 
     0.625
fwdF-1
Tungsten-containing formylmethanofuran dehydrogenase subunit F.
 
     0.565
MCP_2431
Conserved hypothetical protein.
       0.553
atw-2
Putative methylcoenzyme M reductase system component A2.
 
    0.552
cbiZ
Putative adenosylcobinamide amidohydrolase.
 
     0.551
atw-1
Putative methylcoenzyme M reductase system component A2.
 
    0.545
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.