STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frhA-2Coenzyme F420 hydrogenase subunit alpha; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (404 aa)    
Predicted Functional Partners:
frhG-2
Coenzyme F420 hydrogenase subunit gamma.
 
 0.999
frhB-3
Coenzyme F420 hydrogenase subunit beta.
 
 0.997
frhG-1
Coenzyme F420 hydrogenase subunit gamma.
 
 0.994
frhB-2
Coenzyme F420 hydrogenase subunit beta.
 
 0.987
frhD
Putative coenzyme F420 hydrogenase-processing subunit.
 
 
 0.966
frhB-1
Putative coenzyme F420 hydrogenase subunit beta.
  
 0.959
mtd
F420-dependent methylenetetrahydromethanopterin dehydrogenase; Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.
     
 0.942
mvhG-2
F420-non-reducing hydrogenase subunit G.
 
 
 0.936
mvhG-1
F420-non-reducing hydrogenase subunit G.
 
 
 0.933
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
  
 
 0.912
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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