Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_2491Conserved hypothetical protein; Belongs to the Roadblock/LC7 family (IPR004942). (115 aa)    
Predicted Functional Partners:
MCP_2943
Conserved hypothetical protein; Contains one Small GTP-binding protein domain (IPR005225).
 
 
 0.968
MCP_0104
Conserved hypothetical protein; Contains one Small GTP-binding protein domain (IPR005225); Belongs to the Roadblock/LC7 family (IPR004942).
 
 
 0.900
mvhG-1
F420-non-reducing hydrogenase subunit G.
 
     0.816
MCP_2495
Ferredoxin.
 
     0.808
mvhA-1
F420-non-reducing hydrogenase subunit A; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
     0.802
MCP_2494
Conserved hypothetical protein.
       0.775
MCP_2487
Cell division ATPase MinD.
 
    0.758
MCP_2489
Hypothetical protein.
       0.723
MCP_2490
Conserved hypothetical protein.
       0.716
MCP_2488
Conserved hypothetical protein.
       0.700
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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