STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2522ABC transporter permease protein. (258 aa)    
Predicted Functional Partners:
MCP_2523
ABC transporter ATP binding protein.
  
 0.998
MCP_2521
Putative ABC transporter substrate binding protein; Contains one Twin-arginine translocation pathway signal domain (IPR006311).
 
  
 0.969
MCP_1758
ABC transporter substrate binding protein.
 
  
 0.911
MCP_0401
Putative ABC transporter.
 
  
 0.831
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
 
  
 0.606
fgd
Similar to F420-dependent alcohol dehydrogenase Adf in Methanofollis liminatans (O93735) and Methanoculleus thermophilus (O93734).
 
  
 0.594
MCP_2524
Contains one Circadian clock protein KaiC domain (IPR010624).
       0.561
MCP_2525
Hypothetical protein.
       0.550
MCP_2526
Hypothetical protein.
       0.550
MCP_1358
Putative phosphoadenosine phosphosulfate reductase.
  
  
 0.512
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.