STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2524Contains one Circadian clock protein KaiC domain (IPR010624). (254 aa)    
Predicted Functional Partners:
MCP_2526
Hypothetical protein.
       0.759
MCP_2525
Hypothetical protein.
       0.757
MCP_2133
KaiB homolog.
 
     0.680
MCP_2131
KaiB homolog.
 
     0.679
MCP_0177
Conserved hypothetical protein.
  
     0.674
MCP_2523
ABC transporter ATP binding protein.
       0.565
MCP_2522
ABC transporter permease protein.
       0.561
MCP_2527
Conserved hypothetical protein.
       0.561
MCP_2521
Putative ABC transporter substrate binding protein; Contains one Twin-arginine translocation pathway signal domain (IPR006311).
       0.452
MCP_2551
Conserved hypothetical protein.
    
0.427
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.