STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiX-2Sirohydrochlorin cobaltochelatase. (118 aa)    
Predicted Functional Partners:
thiC
Thiamine biosynthesis protein ThiC.
     
 0.815
cysG
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase; Bifunctional protein.
  
  
 0.691
cobA
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.629
MCP_2530
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279).
     
 0.567
MCP_0919
Conserved hypothetical protein.
  
     0.467
MCP_2219
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF171 family (IPR003750).
  
     0.451
hemD
uroporphyrinogen-III synthase.
 
  
 0.444
MCP_0363
Conserved hypothetical protein.
 
   
 0.442
MCP_1358
Putative phosphoadenosine phosphosulfate reductase.
  
  
 0.439
MCP_0362
Conserved hypothetical protein.
 
   
 0.438
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.