STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2530Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). (206 aa)    
Predicted Functional Partners:
MCP_1280
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279); Contains at least one Rhodanese-like domain (IPR001763).
 
 0.948
MCP_1985
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279); Contains at least one Rhodanese-like domain (IPR001763).
 
0.931
MCP_0283
Conserved hypothetical protein.
    
 0.903
thiC
Thiamine biosynthesis protein ThiC.
  
  
 0.613
MCP_1489
Conserved hypothetical protein.
  
    0.589
MCP_2808
Putative 2-isopropylmalate synthase.
  
    0.579
cbiX-2
Sirohydrochlorin cobaltochelatase.
     
 0.566
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
   
 
 0.542
MCP_2062
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF123 family (IPR002837).
       0.541
MCP_2263
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF504 family (IPR007547).
       0.536
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.