STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2541Putative polysaccharide biosynthesis protein. (416 aa)    
Predicted Functional Partners:
MCP_0949
Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173).
  
  
 0.841
MCP_2542
Hypothetical protein.
       0.775
rfbB
dTDP-glucose 4,6-dehydratase.
  
  
 0.761
rfbA
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.760
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.676
MCP_0517
Putative dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.674
rfbC
Putative dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.674
MCP_2540
Hypothetical protein.
     
 0.670
MCP_0769
Conserved hypothetical protein.
 
   
 0.619
MCP_2539
Conserved hypothetical protein; Contains one Glycosyl transferase, group 1 domain (IPR001296).
  
  
 0.576
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.