STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2546Conserved hypothetical protein; Contains one Protein of unknown function DUF1616 domain (IPR011674). (322 aa)    
Predicted Functional Partners:
MCP_2322
Conserved hypothetical protein; Contains one RNA binding S1 domain (IPR003029); Contains one RNucleic acid binding, OB-fold, tRNA/helicase-type domain (IPR004365).; Contains one Phosphoesterase, RecJ-like (IPR001667).
  
    0.577
MCP_2065
Belongs to the Uncharacterised conserved protein UCP015877, zinc finger family (IPR012041).
  
     0.570
MCP_1516
Archaeosine tRNA-ribosyltransferase.
 
     0.558
MCP_2845
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0153 family (IPR005358).
  
    0.549
MCP_0843
Conserved hypothetical protein.
 
    0.548
atpE-1
A-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.541
MCP_0064
Putative ATP-dependent helicase.
  
    0.510
MCP_2705
Putative oligosaccharyl transferase.
 
     0.464
MCP_0890
Putative polysaccharide biosynthesis protein.
 
    0.450
MCP_0147
Conserved hypothetical protein.
  
     0.440
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.