STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2553Peptidase M50 family protein; Belongs to the peptidase M50B family. (373 aa)    
Predicted Functional Partners:
MCP_0970
Putative FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
   0.625
pdhD
Putative pyruvate dehydrogenase E3 component; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
   0.625
MCP_2554
Conserved hypothetical protein; Contains one PRC-barrel domain (IPR007903).
       0.598
MCP_2359
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
 
 
 
 0.594
MCP_0752
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
 
 
 
 0.583
MCP_2552
TraB family protein.
       0.579
MCP_2739
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
 
 
 
 0.579
MCP_1483
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
 
 
 
 0.577
MCP_1280
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279); Contains at least one Rhodanese-like domain (IPR001763).
   
 
 0.522
MCP_1723
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
   
 
 0.522
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.