STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
rocFArginase; Belongs to the arginase family. (305 aa)    
Predicted Functional Partners:
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
 0.956
argF
Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
   
 0.927
MCP_0590
Belongs to the Conserved hypothetical protein 300 family (IPR005239); Contains one LOR/SDH bifunctional enzyme conserved region domain (IPR007545).
    
 0.921
argJ
Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
    
 0.918
argE
Acetylornithine deacetylase.
  
 
 0.918
pdaD-1
Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
    
 0.917
pdaD-2
Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
    
 0.917
argH
Argininosuccinate lyase.
    
 0.836
MCP_2360
Aldehyde dehydrogenase.
  
 
 0.748
pdhB
Pyruvate dehydrogenase E1 component beta subunit.
  
 
 0.737
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.