Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_2610Amino acid transporter. (474 aa)    
Predicted Functional Partners:
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
  
 0.793
MCP_2742
Putative amino acid ABC transporter amino acid binding protein.
     
 0.678
MCP_0437
Isocitrate/isopropylmalate dehydrogenase family protein.
    
 
 0.641
pycB
Pyruvate carboxylase subunit B.
      
 0.604
MCP_0508
Similar to L(+)-tartrate dehydratase subunit beta TtdB in Escherichia coli. (P0AC35).
     
 0.602
MCP_0300
GTP-binding protein.
  
 
 0.593
MCP_0825
Conserved hypothetical protein; Contains one Tetratricopeptide TPR_2 repeat (IPR013105).
  
 
 0.563
atpI-1
A-type ATP synthase subunit I; Belongs to the V-ATPase 116 kDa subunit family.
   
 
 0.509
atpI-2
A-type ATP synthase subunit I; Belongs to the V-ATPase 116 kDa subunit family.
   
 
 0.509
rpoA1
DNA-directed RNA polymerase subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.487
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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