STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2633ABC transporter ATP binding protein. (327 aa)    
Predicted Functional Partners:
MCP_2632
ABC transporter permease protein.
  
 0.947
MCP_1195
ABC transporter permease protein.
  
 0.713
MCP_1197
PadR-like family transcriptional regulator.
  
  
 0.665
MCP_1365
ABC transporter permease protein.
 
  
 0.665
MCP_0255
ABC transporter permease protein.
  
 0.656
psmA
Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
   
 
 0.648
MCP_0564
ABC transporter permease protein.
 
  
 0.643
rnp2
Ribonuclease P protein component 2; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
       0.615
MCP_2629
Conserved hypothetical protein; Belongs to the Shwachman-Bodian-Diamond syndrome proteins family (IPR002140).
     
 0.604
MCP_2511
ABC transporter permease protein; Similar to Nodulation protein J in Rhizobium sp. (strain N33) (P72336).
 
  
 0.601
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.