Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_2639Putative hydrogenase membrane component. (309 aa)    
Predicted Functional Partners:
MCP_2640
Putative [NiFe]-hydrogenase large subunit.
 
 0.999
MCP_2638
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
 0.997
echA
Ech hydrogenase subunit A.
 
 
 0.993
echF
Ech hydrogenase subunit F.
  
 0.991
MCP_2685
Putative NADH:ubiquinone dehydrogenase.
 
 
 0.988
echD
Ech hydrogenase subunit D.
  
 0.985
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
 
   
 0.941
rpl10e
50S ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.
  
 
 0.848
rpl2p
50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
 
 0.839
rps11p
30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 
 0.833
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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