STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_26444Fe-4S ferredoxin, iron-sulfur binding protein. (147 aa)    
Predicted Functional Partners:
vhtC
F420-non-reducing hydrogenase subunit cytochrome B.
  
 
 0.984
fdhA-2
Formate dehydrogenase alpha chain.
 
 
 0.978
fdhA-1
Formate dehydrogenase alpha chain.
 
 
 0.977
MCP_0618
Tungsten-containing aldehyde ferredoxin oxidoreductase.
 
 
 0.929
MCP_0658
Tungsten-containing aldehyde ferredoxin oxidoreductase.
 
 
 0.928
MCP_2640
Putative [NiFe]-hydrogenase large subunit.
  
  
 0.924
MCP_2638
4Fe-4S ferredoxin, iron-sulfur binding protein.
  
  
 0.844
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
     
 0.832
MCP_2639
Putative hydrogenase membrane component.
  
  
 0.818
MCP_2642
Putative Fe-S cluster-binding oxidoreductase component; Similar to CoB--CoM heterodisulfide reductase subunit B HdrB in Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) (Q50755).
     
 0.809
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.