Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_26444Fe-4S ferredoxin, iron-sulfur binding protein. (147 aa)    
Predicted Functional Partners:
vhtC
F420-non-reducing hydrogenase subunit cytochrome B.
  
 
 0.957
MCP_2640
Putative [NiFe]-hydrogenase large subunit.
  
  
 0.945
fdhA-2
Formate dehydrogenase alpha chain.
 
 
 0.922
fdhA-1
Formate dehydrogenase alpha chain.
 
 
 0.921
MCP_0989
Glutamate synthase.
     
 0.888
MCP_0618
Tungsten-containing aldehyde ferredoxin oxidoreductase.
 
 
 0.881
MCP_0658
Tungsten-containing aldehyde ferredoxin oxidoreductase.
 
 
 0.843
MCP_2638
4Fe-4S ferredoxin, iron-sulfur binding protein.
  
  
 0.841
MCP_1732
Sulfite reductase.
   
 
 0.827
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
     
 0.825
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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