STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmYConserved hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family. (199 aa)    
Predicted Functional Partners:
MCP_2652
Hypothetical protein.
       0.709
pus10
Conserved hypothetical protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
 
   
 0.708
MCP_2065
Belongs to the Uncharacterised conserved protein UCP015877, zinc finger family (IPR012041).
  
     0.651
atpE-1
A-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.641
atpF-1
A-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.631
MCP_2870
Putative HTH-type transcriptional regulator.
  
     0.619
atpC-1
A-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.604
MCP_0292
Conserved hypothetical protein.
 
     0.543
MCP_2839
Conserved hypothetical protein; Contains one Elongator protein 3/MiaB/NifBdomain (IPR006638); Contains one Radical SAM domain (IPR007197).
  
     0.537
MCP_1515
Belongs to the Conserved hypothetical protein 1210 family (IPR005909).
  
     0.527
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.