STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2668Putative Na(+)/H(+) antiporter. (659 aa)    
Predicted Functional Partners:
MCP_0815
Putative ATP-dependent helicase.
  
    0.840
MCP_2277
Putative cytochrome c biogenesis protein.
  
    0.813
MCP_0018
Conserved hypothetical protein.
   
    0.792
MCP_1602
Hypothetical protein; Contains one DEAD/DEAH box helicase, N-terminal domain (IPR011545); Contains one Helicase, C-terminal domain (IPR001650).
  
    0.777
MCP_1744
Conserved hypothetical protein.
   
    0.775
MCP_1137
Conserved hypothetical protein.
   
    0.770
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
     
 0.552
ribK
Conserved hypothetical protein; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
       0.532
MCP_1747
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279).
  
  
 0.518
MCP_1353
Hypothetical protein; Belongs to the Phosphoesterase, PA-phosphatase related family (IPR000326).
  
  
 0.461
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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