STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
MCP_2721Putative nucleotidyl transferase. (332 aa)    
Predicted Functional Partners:
MCP_2720
Putative nucleotide sugar epimerase/dehydratase.
  
 0.988
rfbA
Glucose-1-phosphate thymidylyltransferase.
 
 
0.987
MCP_2422
Phosphomannomutase/phosphoglucomutase; Bifunctional protein; Belongs to the phosphohexose mutase family.
 
 0.950
rfbB
dTDP-glucose 4,6-dehydratase.
 
 
 0.938
MCP_0805
Putative sugar-1-phosphate nucleotidylyltransferase.
 
  
 
0.919
MCP_0949
Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173).
  
 
 0.894
MCP_0863
Putative nucleotide sugar epimerase/dehydratase.
  
 0.865
MCP_1530
Putative nucleotide sugar epimerase/dehydratase.
  
 0.863
ugd
UDP-glucose 6-dehydrogenase.
  
 
 0.851
rfbD
dTDP-4-dehydrorhamnose reductase.
  
  
 0.848
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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