STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2722Conserved hypothetical protein; Contains at least three Pyrrolo-quinoline quinone repeats (IPR002372). (399 aa)    
Predicted Functional Partners:
MCP_2723
Putative oligosaccharyl transferase.
       0.775
MCP_2721
Putative nucleotidyl transferase.
  
    0.747
MCP_2720
Putative nucleotide sugar epimerase/dehydratase.
     
 0.746
rfbA
Glucose-1-phosphate thymidylyltransferase.
       0.719
rfbD
dTDP-4-dehydrorhamnose reductase.
       0.717
hisS
histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
    0.534
MCP_2724
Hypothetical protein.
       0.512
MCP_1835
Conserved hypothetical protein; Belongs to the Band 7 protein family (IPR001107); Belongs to the Stomatin family (IPR001972).
 
 
 0.502
MCP_2736
Conserved hypothetical protein.
  
 
 0.428
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.