STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2723Putative oligosaccharyl transferase. (820 aa)    
Predicted Functional Partners:
rpl32e
50S ribosomal protein L32e.
 
   0.841
rpl44e
50S ribosomal protein L44E; Binds to the 23S rRNA.
 
 
   0.838
rpl10e
50S ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.
 
 
   0.797
rpl31e
50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
 
 
 
 0.789
rpl13p
50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.778
rpl30p
50S ribosomal protein L30P.
  
 
 0.776
MCP_2722
Conserved hypothetical protein; Contains at least three Pyrrolo-quinoline quinone repeats (IPR002372).
       0.775
rfbA
Glucose-1-phosphate thymidylyltransferase.
 
     0.772
rpl21e
50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 
 0.770
rpl18p
50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
  
 
 0.770
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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