STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2734Conserved hypothetical protein. (345 aa)    
Predicted Functional Partners:
MCP_2736
Conserved hypothetical protein.
 
     0.946
MCP_2737
Conserved hypothetical protein.
 
     0.928
MCP_2733
Conserved hypothetical protein.
       0.799
MCP_2735
Conserved hypothetical protein.
      
0.783
MCP_2586
Conserved hypothetical protein; Contains one Bacterio-opsin activator, HTHdomain (IPR007050).
  
     0.613
MCP_1249
Conserved hypothetical protein.
  
     0.509
srp19
Signal recognition particle 19 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
  
     0.466
MCP_0053
Hypothetical protein.
  
     0.464
MCP_0536
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594).
  
     0.452
MCP_1757
Putative histidine kinase; Contains one ATP-binding region, ATPase-like domain (IPR003594); Contains one Histidine kinase, HAMP region domain (IPR003660).
  
     0.436
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.