Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2736Conserved hypothetical protein. (379 aa)    
Predicted Functional Partners:
MCP_2734
Conserved hypothetical protein.
 
     0.965
MCP_2737
Conserved hypothetical protein.
 
     0.950
MCP_2735
Conserved hypothetical protein.
       0.901
MCP_2733
Conserved hypothetical protein.
       0.865
MCP_0377
Peptidase S54, rhomboid family protein; Contains one Zinc finger, AN1-type domain (IPR000058).
 
 0.808
MCP_0300
GTP-binding protein.
  
 0.783
dnaK
Heat shock protein 70; Acts as a chaperone.
  
 0.698
MCP_1836
Conserved hypothetical protein; Belongs to the Nodulation efficiency, NfeD family (IPR002810).
  
 
 0.694
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
   
 0.650
lon
ATP-dependent protease La; Belongs to the peptidase S16 family.
  
 
 0.635
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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