STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2742Putative amino acid ABC transporter amino acid binding protein. (279 aa)    
Predicted Functional Partners:
MCP_2743
Putative amino acid ABC transporter permease protein; Contains one PEGA domain (IPR013229).
 
 0.996
MCP_2744
Putative amino acid ABC transporter ATP binding protein.
 
 
 0.965
MCP_1491
Amino acid transporter.
  
 
 0.798
MCP_1966
Amino acid transporter; Contains two UspA domains (IPR006016).
  
 
 0.798
MCP_2610
Amino acid transporter.
     
 0.678
MCP_0437
Isocitrate/isopropylmalate dehydrogenase family protein.
  
  
 0.639
MCP_0508
Similar to L(+)-tartrate dehydratase subunit beta TtdB in Escherichia coli. (P0AC35).
     
 0.609
pycB
Pyruvate carboxylase subunit B.
      
 0.597
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.553
MCP_2438
Asparagine synthase.
     
 0.454
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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