STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2753Putative transcriptional regulator. (244 aa)    
Predicted Functional Partners:
MCP_0027
Conserved hypothetical protein; Contains one Cobalamin vitamin B12-binding domain (IPR006158); Contains one Elongator protein 3/MiaB/NifB domain (IPR006638).; Contains one Radical SAM domain (IPR007197).
  
  
 0.747
MCP_0090
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0004 family (IPR005839); Contains one Cobalamin vitamin B12-binding domain (IPR006158).; Contains one Elongator protein 3/MiaB/NifB domain (IPR006638).; Contains one Radical SAM domain (IPR007197).
  
  
 0.747
MCP_1489
Conserved hypothetical protein.
  
  
 0.747
MCP_0362
Conserved hypothetical protein.
 
   
 0.644
MCP_0267
Conserved hypothetical protein; Contains one Phosphate acetyl/butaryl transferase domain (IPR002505); Similar to Putative methyltransferase mtx subunit X in Methanosarcina barkeri (strain Fusaro / DSM 804) (O32853).
  
     0.600
MCP_0363
Conserved hypothetical protein.
 
   
 0.565
MCP_1672
Conserved hypothetical protein.
 
  
 0.554
MCP_1415
Putative small nucleolar RNP Sm protein.
 
     0.543
MCP_0104
Conserved hypothetical protein; Contains one Small GTP-binding protein domain (IPR005225); Belongs to the Roadblock/LC7 family (IPR004942).
 
   
 0.536
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
       0.520
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.