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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2783Conserved hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. (170 aa)    
Predicted Functional Partners:
MCP_2151
Conserved hypothetical protein; Belongs to the RIO kinase family (IPR000687); Contains one Protein kinasedomain (IPR000719).
    0.785
MCP_0045
GTP-binding protein.
 
    0.668
aif6
Translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
  
 0.667
MCP_1556
snoRNA binding protein Nop56 homolog.
  
  
 0.644
MCP_2065
Belongs to the Uncharacterised conserved protein UCP015877, zinc finger family (IPR012041).
 
    0.626
MCP_1465
Putative serine/threonine kinase.
 
  
 0.625
MCP_2296
Conserved hypothetical protein; Contains one Uncharacterized domain 2 (IPR004521).
  
     0.593
MCP_2279
Putative ATP-dependent helicase.
 
     0.574
rpl30e
50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family.
  
    0.559
MCP_2782
Putative (S)-2,3-Di-O-geranylgeranylglyceryl phosphate synthase.
       0.559
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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