STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2789Conserved hypothetical protein. (331 aa)    
Predicted Functional Partners:
MCP_2788
Putative transcriptional regulator; Similar to DNA-binding protein tfx in Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) (P56811).
       0.749
fdhD
Protein FdhD homolog; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.587
moaB
Molybdenum cofactor biosynthesis protein B.
       0.530
MCP_2790
Hypothetical protein.
       0.492
MCP_1422
Putative DNA double-strand break repair Rad50 ATPase.
  
     0.483
MCP_1421
Conserved hypothetical protein.
  
     0.446
MCP_2691
Conserved hypothetical protein.
  
     0.437
MCP_0190
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF63 family (IPR002749).
 
     0.417
MCP_0922
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF87 family (IPR002789).
 
     0.407
MCP_1423
Putative DNA double-strand break repair protein Mre11.
  
     0.404
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.