STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2798Hypothetical protein; Contains two Na-Ca exchanger/integrin-beta4 domains (IPR003644). (636 aa)    
Predicted Functional Partners:
MCP_2797
Hypothetical protein.
       0.773
MCP_0325
Hypothetical protein; Contains at least one Bacterial Ig-like, group 1 domain (IPR003344); Contains at least one Cna B-type domain (IPR008454).
  
     0.660
MCP_2015
Conserved hypothetical protein; Contains at least one Tetratricopeptide TPR_1 repeat (IPR001440).
  
     0.515
MCP_2385
Hypothetical protein.
  
     0.506
MCP_0930
Hypothetical protein; Contains at least one NHL repeatrepeat (IPR001258).
  
     0.447
moeA-1
Putative molybdopterin biosynthesis protein.
       0.408
moeA-2
Putative molybdopterin biosynthesis protein.
       0.408
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.