STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2805ABC transporter ATP binding protein. (238 aa)    
Predicted Functional Partners:
MCP_2804
ABC transporter permease protein.
  
  0.968
MCP_1862
ABC transporter permease protein.
 
 0.934
MCP_2984
Putative ABC transporter; Contains one Protein of unknown function DUF214, permase predicted domain (IPR003838).
     0.912
MCP_1242
ABC transporter ATP binding protein.
    
0.907
MCP_1240
ABC transporter ATP binding protein.
    
0.902
MCP_2983
Putative ABC transporter; Contains one Protein of unknown function DUF214, permase predicted domain (IPR003838).
     0.893
MCP_2665
ABC transporter permease protein.
 
  
  0.867
MCP_1562
Putative peptide ABC transporter permease protein.
      0.788
MCP_2743
Putative amino acid ABC transporter permease protein; Contains one PEGA domain (IPR013229).
 
    0.677
rpl2p
50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
 
     0.618
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.