STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
MCP_2809Conserved hypothetical protein; Belongs to the Protein of unknown function DUF88 family (IPR002790). (188 aa)    
Predicted Functional Partners:
MCP_0377
Peptidase S54, rhomboid family protein; Contains one Zinc finger, AN1-type domain (IPR000058).
 
   
 0.659
MCP_0371
Putative TatD deoxyribonuclease.
 
     0.603
MCP_2152
Putative K+-dependent Na+/Ca+ exchanger protein.
       0.536
MCP_0857
Sep-tRNA:Cys-tRNA synthase; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.
  
     0.474
MCP_2322
Conserved hypothetical protein; Contains one RNA binding S1 domain (IPR003029); Contains one RNucleic acid binding, OB-fold, tRNA/helicase-type domain (IPR004365).; Contains one Phosphoesterase, RecJ-like (IPR001667).
  
     0.471
dut
Probable deoxyuridine 5'-triphosphate nucleotidohydrolase.
 
     0.454
rnp3
Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
 
     0.452
thyA
Thymidylate synthase.
 
     0.450
MCP_2808
Putative 2-isopropylmalate synthase.
       0.443
MCP_2940
Belongs to the Conserved hypothetical protein 374 family (IPR005242).
 
   
 0.431
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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