STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2809Conserved hypothetical protein; Belongs to the Protein of unknown function DUF88 family (IPR002790). (188 aa)    
Predicted Functional Partners:
MCP_0377
Peptidase S54, rhomboid family protein; Contains one Zinc finger, AN1-type domain (IPR000058).
 
   
 0.486
MCP_0857
Sep-tRNA:Cys-tRNA synthase; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.
  
     0.474
MCP_2322
Conserved hypothetical protein; Contains one RNA binding S1 domain (IPR003029); Contains one RNucleic acid binding, OB-fold, tRNA/helicase-type domain (IPR004365).; Contains one Phosphoesterase, RecJ-like (IPR001667).
  
     0.471
dut
Probable deoxyuridine 5'-triphosphate nucleotidohydrolase.
 
     0.456
MCP_2808
Putative 2-isopropylmalate synthase.
       0.455
MCP_0510
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0118 family (IPR002549).
 
   
 0.454
thyA
Thymidylate synthase.
 
     0.450
rnp3
Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
 
     0.450
MCP_2692
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0118 family (IPR002549).
 
   
 0.442
MCP_2940
Belongs to the Conserved hypothetical protein 374 family (IPR005242).
 
   
 0.433
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.