Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_2820Conserved hypothetical protein; Belongs to the Protein of unknown function DUF111 family (IPR002822). (394 aa)    
Predicted Functional Partners:
MCP_0138
CpmA homolog.
 
  
 0.876
MCP_2272
Belongs to the Conserved hypothetical protein 268 family (IPR005232).
 
  
 0.864
MCP_0283
Conserved hypothetical protein.
 
  
 0.583
MCP_2819
Cell division control protein 48.
       0.516
MCP_0274
Conserved hypothetical protein; Contains two 4Fe-4S ferredoxin, iron-sulfur binding domains (IPR001450).
 
    0.452
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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