STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2831Conserved hypothetical protein; Contains one Adenylate/cytidine kinase, N-terminal domain (IPR011769); Belongs to the Protein of unknown function DUF54 family (IPR002739). (317 aa)    
Predicted Functional Partners:
MCP_2832
Conserved hypothetical protein; Contains one Xylose isomerase-like TIM barrel domain (IPR012307).
  
    0.855
MCP_2267
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF137 family (IPR002855).
 
   
 0.826
MCP_2833
MFS transporter; Similar to Fosmidomycin resistance protein in Escherichia coli (P52067).
     
 0.798
MCP_2834
MFS transporter; Similar to Fosmidomycin resistance protein in Escherichia coli (P52067).
     
 0.798
cca
CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
 
     0.780
ligT
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.714
MCP_2421
Molybdopterin-guanine dinucleotide biosynthesis MobB/molybdopterin biosynthesis MoaE; Bifunctional protein.
  
    0.705
gap-1
Glyceraldehyde-3-phosphate dehydrogenase.
 
   
 0.632
gap-2
Glyceraldehyde-3-phosphate dehydrogenase.
 
   
 0.627
MCP_2673
Conserved hypothetical protein; Catalyzes the GTP-dependent phosphorylation of the 3'- hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA).
  
   
 0.623
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.