STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2832Conserved hypothetical protein; Contains one Xylose isomerase-like TIM barrel domain (IPR012307). (256 aa)    
Predicted Functional Partners:
MCP_2831
Conserved hypothetical protein; Contains one Adenylate/cytidine kinase, N-terminal domain (IPR011769); Belongs to the Protein of unknown function DUF54 family (IPR002739).
  
    0.855
MCP_2834
MFS transporter; Similar to Fosmidomycin resistance protein in Escherichia coli (P52067).
 
    0.814
MCP_2833
MFS transporter; Similar to Fosmidomycin resistance protein in Escherichia coli (P52067).
 
    0.809
MCP_0765
Putative oxidoreductase.
  
  
 0.540
MCP_0852
Putative oxidoreductase.
  
  
 0.540
MCP_0895
Putative oxidoreductase.
  
  
 0.540
MCP_2830
Conserved hypothetical protein.
       0.526
MCP_1262
Putative carbohydrate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.490
MCP_2372
Putative carbohydrate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.485
MCP_0267
Conserved hypothetical protein; Contains one Phosphate acetyl/butaryl transferase domain (IPR002505); Similar to Putative methyltransferase mtx subunit X in Methanosarcina barkeri (strain Fusaro / DSM 804) (O32853).
  
     0.474
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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