STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2839Conserved hypothetical protein; Contains one Elongator protein 3/MiaB/NifBdomain (IPR006638); Contains one Radical SAM domain (IPR007197). (553 aa)    
Predicted Functional Partners:
MCP_2840
Copper binding protein.
       0.574
MCP_2838
Hypothetical protein.
       0.555
MCP_1819
Conserved hypothetical protein; Contains one Radical SAMdomain (IPR007197).
 
     0.540
trmY
Conserved hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
     0.537
MCP_2065
Belongs to the Uncharacterised conserved protein UCP015877, zinc finger family (IPR012041).
  
     0.502
MCP_2837
Hypothetical protein.
       0.467
MCP_2746
Putative HTH-type transcriptional regulator.
  
     0.464
MCP_2841
Copper binding protein.
       0.463
MCP_2842
Conserved hypothetical protein.
       0.463
MCP_1516
Archaeosine tRNA-ribosyltransferase.
  
     0.449
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.