STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2883Conserved hypothetical protein; Contains one Beta-Ig-H3/fasciclin domain (IPR000782). (159 aa)    
Predicted Functional Partners:
MCP_2884
Conserved hypothetical protein; Contains one Beta-Ig-H3/fasciclin domain (IPR000782).
 
    
0.716
MCP_2639
Putative hydrogenase membrane component.
   
 
 0.625
echF
Ech hydrogenase subunit F.
   
 
 0.594
MCP_2638
4Fe-4S ferredoxin, iron-sulfur binding protein.
   
 
 0.594
echD
Ech hydrogenase subunit D.
   
   0.573
MCP_2640
Putative [NiFe]-hydrogenase large subunit.
   
   0.573
echA
Ech hydrogenase subunit A.
   
 
 0.562
MCP_2685
Putative NADH:ubiquinone dehydrogenase.
   
 
 0.562
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.