STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2889Conserved hypothetical protein. (216 aa)    
Predicted Functional Partners:
MCP_1467
Belongs to the Conserved hypothetical protein 61 family (IPR004425).
  
    0.658
MCP_2862
Conserved hypothetical protein; Contains one Pyridoxamine 5'-phosphate oxidase-related, FMN-binding core domain (IPR011576).
  
     0.588
MCP_1468
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF473 family (IPR007417).
   
    0.552
MCP_1916
4Fe-4S ferredoxin, iron-sulfur binding protein.
   
    0.508
MCP_2890
Conserved hypothetical protein; Contains one Beta-Ig-H3/fasciclin domain (IPR000782).
       0.489
MCP_2888
Conserved hypothetical protein.
       0.456
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.