STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2894Putative MarR family transcriptional regulator. (154 aa)    
Predicted Functional Partners:
MCP_2892
Conserved hypothetical protein.
 
     0.845
MCP_2895
Conserved hypothetical protein.
       0.778
MCP_2896
CDP-alcohol phosphatidyltransferase family protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.759
MCP_2893
Putative flavodoxin.
 
  
 0.691
MCP_0597
TetR family transcriptional regulator.
 
   
 0.540
MCP_1672
Conserved hypothetical protein.
 
     0.515
MCP_0595
TetR family transcriptional regulator.
 
   
 0.496
MCP_1635
Putative ABC transporter.
  
     0.477
MCP_0165
Phosphatidate cytidylyltransferase family protein.
 
     0.456
MCP_2003
UbiA prenyltransferase family protein.
 
     0.441
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.