STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
MCP_2917Putative iron compound ABC transporter iron compound binding protein. (318 aa)    
Predicted Functional Partners:
MCP_1094
Putative iron compound ABC transporter ATP binding protein.
 
 
 0.936
MCP_1095
Putative iron compound ABC transporter permease protein.
 
 
 0.914
MCP_1075
Putative iron compound ABC transporter ATP binding protein.
 
 
 0.867
MCP_1076
Putative iron compound ABC transporter permease protein.
 
 
 0.853
cbiZ
Putative adenosylcobinamide amidohydrolase.
 
  
 0.852
MCP_1789
Putative iron compound ABC transporter ATP binding protein.
 
 
 0.843
MCP_1790
Putative iron compound ABC transporter permease protein.
 
 
 0.841
cobB
Probable cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. Involved in the biosynthesis of the unique nickel-containing tetrapyrrole coenzyme F430, the prosthetic group of methyl-coenzyme M reductase (MCR), which plays a key role in methanogenesis and anaerobic methane oxidation. Catalyzes the ATP- dependent amidation of the two carboxylate groups at positions a and c of Ni-sirohydrochlorin, using L-glutamine or ammonia as the nitrogen source.
 
  
 0.535
MCP_2918
acetyl-CoA synthetase.
       0.468
MCP_2915
TetR family transcriptional regulator.
     
 0.402
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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