STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2922Hypothetical protein; Contains at least one PBS lyase HEAT-like repeat (IPR004155). (255 aa)    
Predicted Functional Partners:
MCP_1210
Conserved hypothetical protein; Contains the PBS lyase HEAT-like repeat (IPR004155).
    
0.891
aif5A
Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
  
 0.851
MCP_0101
Conserved hypothetical protein; Belongs to the HesB/YadR/YfhF family (IPR000361).
   
 
 0.742
MCP_0360
Hypothetical protein; Contains at least one PBS lyase HEAT-like repeat (IPR004155).
 
     0.699
MCP_2031
Conserved hypothetical protein; Contains at least PBS lyase HEAT-like repeat (IPR004155).
 
     0.698
MCP_1142
Hypothetical protein; Contains at least one PBS lyase HEAT-like repeat (IPR004155).
  
     0.687
hemD
uroporphyrinogen-III synthase.
 
   
 0.655
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
       0.602
cobA
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
       0.592
hemC
Probable porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
       0.592
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.