Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vhtGF420-non-reducing hydrogenase small subunit. (375 aa)    
Predicted Functional Partners:
vhtA
F420-non-reducing hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 0.996
mvhA-1
F420-non-reducing hydrogenase subunit A; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.937
vhtC
F420-non-reducing hydrogenase subunit cytochrome B.
     
 0.898
vhtD
Putative F420-nonreducing hydrogenase subunit D.
 
  
 0.896
frhA-2
Coenzyme F420 hydrogenase subunit alpha; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.894
frhA-1
Coenzyme F420 hydrogenase subunit alpha; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.889
hypD
Hydrogenase expression/formation protein HypD.
 
  
 0.868
mvhA-2
F420-non-reducing hydrogenase subunit A.
  
 
 0.844
hypF
Carbamoyltransferase HypF.
 
 
 
 0.840
hypE
Hydrogenase expression/formation protein HypE.
 
   
 0.838
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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