STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vhtAF420-non-reducing hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (579 aa)    
Predicted Functional Partners:
vhtG
F420-non-reducing hydrogenase small subunit.
 
 0.996
hypA
Probable hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.915
vhtC
F420-non-reducing hydrogenase subunit cytochrome B.
     
 0.831
vhtD
Putative F420-nonreducing hydrogenase subunit D.
 
  
 0.826
mvhD-1
F420-non-reducing hydrogenase iron-sulfur subunit D.
  
 
 0.812
mvhD-2
F420-non-reducing hydrogenase iron-sulfur subunit D.
  
 
 0.812
hypD
Hydrogenase expression/formation protein HypD.
 
 
 0.811
frhD
Putative coenzyme F420 hydrogenase-processing subunit.
 
  
 0.809
frhB-1
Putative coenzyme F420 hydrogenase subunit beta.
  
 
 0.796
frhG-1
Coenzyme F420 hydrogenase subunit gamma.
  
 
 0.788
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.