Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2969Conserved hypothetical protein. (369 aa)    
Predicted Functional Partners:
MCP_1421
Conserved hypothetical protein.
 
 
 
 0.853
MCP_2968
Hypothetical protein.
     
 0.754
MCP_2967
Conserved hypothetical protein.
       0.752
MCP_2972
Putative bacterial type II secretion system protein.
 
   
 0.720
pfpI
Intracellular protease 1.
       0.652
MCP_2970
Putative phosphoribosyltransferase.
       0.648
infB
Probable translation initiation factor 2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
 
 
   0.646
MCP_1423
Putative DNA double-strand break repair protein Mre11.
 
   
 0.484
MCP_1422
Putative DNA double-strand break repair Rad50 ATPase.
 
   
 0.480
MCP_2973
Conserved hypothetical protein.
       0.457
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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