STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2972Putative bacterial type II secretion system protein. (702 aa)    
Predicted Functional Partners:
MCP_2973
Conserved hypothetical protein.
       0.888
MCP_2570
Conserved hypothetical protein; Belongs to the Bacterial type II secretion system protein family (IPR001992).
 
  
 0.723
MCP_2969
Conserved hypothetical protein.
 
   
 0.720
MCP_2571
Conserved hypothetical protein; Belongs to the Bacterial type II secretion system protein family (IPR001992).
 
  
 0.697
MCP_1328
Putative bacterial type II secretion system protein.
 
  
 0.634
MCP_2974
Conserved hypothetical protein.
     
 0.579
MCP_2951
Conserved hypothetical protein.
       0.536
MCP_2778
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF112, transmembrane family (IPR002823).
 
     0.535
MCP_2970
Putative phosphoribosyltransferase.
       0.535
pfpI
Intracellular protease 1.
       0.535
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.