STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
isfIron-sulfur flavoprotein. (197 aa)    
Predicted Functional Partners:
MCP_2978
Putative flavoprotein.
 
    0.939
MCP_0049
Putative iron-sulfur flavoprotein.
  
     0.693
MCP_2980
Conserved hypothetical protein.
       0.592
MCP_1161
Putative oxidoreductase.
     
 0.537
MCP_1073
Putative carbon monoxide dehydrogenase accessory protein.
 
     0.443
MCP_2981
GCN5-related N-acetyltransferase family protein.
       0.428
MCP_0560
Conserved hypothetical protein.
  
     0.417
thyA
Thymidylate synthase.
 
     0.417
MCP_1352
Putative flavoprotein.
 
    0.416
MCP_2246
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF106, transmembrane family (IPR002809).
   
    0.412
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.