STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2984Putative ABC transporter; Contains one Protein of unknown function DUF214, permase predicted domain (IPR003838). (402 aa)    
Predicted Functional Partners:
MCP_2986
ABC transporter ATP binding protein.
 
 0.998
MCP_2334
ABC transporter ATP binding protein.
 
 0.995
MCP_1083
Putative cobalt ABC transporter ATP binding protein.
    0.918
MCP_2744
Putative amino acid ABC transporter ATP binding protein.
    0.915
MCP_2523
ABC transporter ATP binding protein.
     0.913
MCP_2805
ABC transporter ATP binding protein.
     0.912
MCP_1847
ABC transporter ATP binding protein.
   
 0.909
MCP_1366
ABC transporter ATP binding protein.
    
 0.882
MCP_2985
Conserved hypothetical protein.
       0.785
MCP_1789
Putative iron compound ABC transporter ATP binding protein.
 
  
 0.781
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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