STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_2996Conserved hypothetical protein; Contains one Rubrerythrin domain (IPR003251). (152 aa)    
Predicted Functional Partners:
MCP_0990
Putative oxidoreductase.
   
 
 0.743
pyrK
Probable dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
   
 
 0.743
mvhD-1
F420-non-reducing hydrogenase iron-sulfur subunit D.
 
 
   0.690
mvhD-2
F420-non-reducing hydrogenase iron-sulfur subunit D.
   
   0.649
MCP_1379
Aldo/keto reductase family protein.
   
   0.621
MCP_2124
Aldo/keto reductase family protein.
   
   0.621
MCP_2664
Aspartate/glutamate/uridylate kinase.
 
     0.533
MCP_2995
Conserved hypothetical protein.
       0.528
MCP_0447
Conserved hypothetical protein.
  
     0.501
MCP_2994
Conserved hypothetical protein.
       0.478
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.