STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC84Coiled-coil domain containing 84. (262 aa)    
Predicted Functional Partners:
PRPF3
pre-mRNA processing factor 3.
    
   0.970
TXNL4B
Thioredoxin like 4B.
    
 
 0.970
SNRPE
Small nuclear ribonucleoprotein polypeptide E.
    
 
 0.884
ENSNPEP00000017871
annotation not available
      
 0.817
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
    
 
 0.763
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
    
 
 0.696
PRPF8
pre-mRNA processing factor 8.
    
   0.695
ZMAT5
Zinc finger matrin-type 5.
    
   0.695
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
   0.695
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
   0.695
Your Current Organism:
Nothoprocta perdicaria
NCBI taxonomy Id: 30464
Other names: N. perdicaria
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.