HID1 protein (Nothoprocta perdicaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

HID1

HID1 domain containing. (288 aa)

Predicted Functional Partners:

ENSNPEP00000005249

0.900

GLE1

0.756

NUP155

0.702

NUP54

0.701

NUP133

0.701

USP7

0.691

ENSNPEP00000020391

0.691

ENSNPEP00000019276

0.686

ENSNPEP00000006416

0.673

RAE1

0.661

Your Current Organism:

Nothoprocta perdicaria

NCBI taxonomy Id: 30464
Other names: N. perdicaria

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNPEP00000005249	ENSNPEP00000006416	ENSNPEP00000005249	ENSNPEP00000006416	annotation not available	annotation not available	0.673
ENSNPEP00000005249	ENSNPEP00000019276	ENSNPEP00000005249	ENSNPEP00000019276	annotation not available	annotation not available	0.686
ENSNPEP00000005249	ENSNPEP00000020391	ENSNPEP00000005249	ENSNPEP00000020391	annotation not available	annotation not available	0.691
ENSNPEP00000005249	GLE1	ENSNPEP00000005249	ENSNPEP00000002590	annotation not available	GLE1 RNA export mediator.	0.756
ENSNPEP00000005249	HID1	ENSNPEP00000005249	ENSNPEP00000005259	annotation not available	HID1 domain containing.	0.900
ENSNPEP00000005249	NUP133	ENSNPEP00000005249	ENSNPEP00000016016	annotation not available	Nucleoporin 133.	0.701
ENSNPEP00000005249	NUP155	ENSNPEP00000005249	ENSNPEP00000002301	annotation not available	Nucleoporin 155.	0.702
ENSNPEP00000005249	NUP54	ENSNPEP00000005249	ENSNPEP00000014162	annotation not available	Nucleoporin 54.	0.701
ENSNPEP00000005249	RAE1	ENSNPEP00000005249	ENSNPEP00000014846	annotation not available	Ribonucleic acid export 1.	0.661
ENSNPEP00000005249	USP7	ENSNPEP00000005249	ENSNPEP00000015432	annotation not available	Ubiquitin specific peptidase 7.	0.691
ENSNPEP00000006416	ENSNPEP00000005249	ENSNPEP00000006416	ENSNPEP00000005249	annotation not available	annotation not available	0.673
ENSNPEP00000006416	ENSNPEP00000019276	ENSNPEP00000006416	ENSNPEP00000019276	annotation not available	annotation not available	0.940
ENSNPEP00000006416	HID1	ENSNPEP00000006416	ENSNPEP00000005259	annotation not available	HID1 domain containing.	0.673
ENSNPEP00000006416	NUP155	ENSNPEP00000006416	ENSNPEP00000002301	annotation not available	Nucleoporin 155.	0.486
ENSNPEP00000006416	RAE1	ENSNPEP00000006416	ENSNPEP00000014846	annotation not available	Ribonucleic acid export 1.	0.871
ENSNPEP00000019276	ENSNPEP00000005249	ENSNPEP00000019276	ENSNPEP00000005249	annotation not available	annotation not available	0.686
ENSNPEP00000019276	ENSNPEP00000006416	ENSNPEP00000019276	ENSNPEP00000006416	annotation not available	annotation not available	0.940
ENSNPEP00000019276	GLE1	ENSNPEP00000019276	ENSNPEP00000002590	annotation not available	GLE1 RNA export mediator.	0.935
ENSNPEP00000019276	HID1	ENSNPEP00000019276	ENSNPEP00000005259	annotation not available	HID1 domain containing.	0.686
ENSNPEP00000019276	NUP133	ENSNPEP00000019276	ENSNPEP00000016016	annotation not available	Nucleoporin 133.	0.970