PRPF4 protein (Nothoprocta perdicaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

PRPF4

pre-mRNA processing factor 4. (519 aa)

Predicted Functional Partners:

PRPF8

0.999

PRPF3

0.999

PPIH

0.999

LSM3

0.999

PRPF6

0.999

SNU13

0.999

LSM7

0.999

LSM8

0.999

SF3A1

0.998

SNRPE

0.998

Your Current Organism:

Nothoprocta perdicaria

NCBI taxonomy Id: 30464
Other names: N. perdicaria

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM7	ENSNPEP00000006919	ENSNPEP00000014700	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM3	LSM8	ENSNPEP00000006919	ENSNPEP00000019029	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM8 homolog, U6 small nuclear RNA associated.	0.999
LSM3	PPIH	ENSNPEP00000006919	ENSNPEP00000006136	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Peptidylprolyl isomerase H.	0.984
LSM3	PRPF3	ENSNPEP00000006919	ENSNPEP00000004964	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 3.	0.999
LSM3	PRPF4	ENSNPEP00000006919	ENSNPEP00000006813	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 4.	0.999
LSM3	PRPF6	ENSNPEP00000006919	ENSNPEP00000012622	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 6.	0.997
LSM3	PRPF8	ENSNPEP00000006919	ENSNPEP00000001169	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 8.	0.999
LSM3	SF3A1	ENSNPEP00000006919	ENSNPEP00000000606	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Splicing factor 3a subunit 1.	0.997
LSM3	SNRPE	ENSNPEP00000006919	ENSNPEP00000004894	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein polypeptide E.	0.999
LSM3	SNU13	ENSNPEP00000006919	ENSNPEP00000013597	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein 13.	0.996
LSM7	LSM3	ENSNPEP00000014700	ENSNPEP00000006919	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM7	LSM8	ENSNPEP00000014700	ENSNPEP00000019029	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM8 homolog, U6 small nuclear RNA associated.	0.999
LSM7	PPIH	ENSNPEP00000014700	ENSNPEP00000006136	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Peptidylprolyl isomerase H.	0.983
LSM7	PRPF3	ENSNPEP00000014700	ENSNPEP00000004964	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 3.	0.997
LSM7	PRPF4	ENSNPEP00000014700	ENSNPEP00000006813	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 4.	0.999
LSM7	PRPF6	ENSNPEP00000014700	ENSNPEP00000012622	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 6.	0.997
LSM7	PRPF8	ENSNPEP00000014700	ENSNPEP00000001169	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 8.	0.995
LSM7	SF3A1	ENSNPEP00000014700	ENSNPEP00000000606	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Splicing factor 3a subunit 1.	0.994
LSM7	SNRPE	ENSNPEP00000014700	ENSNPEP00000004894	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein polypeptide E.	0.999
LSM7	SNU13	ENSNPEP00000014700	ENSNPEP00000013597	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein 13.	0.998