STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP30Ubiquitin specific peptidase 30. (487 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
 0.988
LOC112954722
Ubiquitin.
    
  0.901
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.901
ENSNPEP00000015924
annotation not available
    
  0.901
TRRAP
Transformation/transcription domain associated protein.
    
 0.886
TADA3
Transcriptional adaptor 3.
    
 0.885
TAF10
TATA-box binding protein associated factor 10.
    
 0.885
TAF9
TATA-box binding protein associated factor 9b.
    
 0.884
ENSNPEP00000017587
annotation not available
    
 0.879
TAF1B
TATA-box binding protein associated factor, RNA polymerase I subunit B.
   
 0.875
Your Current Organism:
Nothoprocta perdicaria
NCBI taxonomy Id: 30464
Other names: N. perdicaria
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.