STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMU1SMU1 DNA replication regulator and spliceosomal factor. (496 aa)    
Predicted Functional Partners:
IK
IK cytokine.
   
 0.999
MFAP1
Microfibril associated protein 1.
   
 0.997
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
   
  0.992
PRPF8
pre-mRNA processing factor 8.
    
 0.990
ZMAT2
Zinc finger matrin-type 2.
    
 0.987
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.987
PRPF38A
pre-mRNA processing factor 38A.
   
 0.986
LSM4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.985
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.985
SF3A2
Splicing factor 3a subunit 2.
    
 0.985
Your Current Organism:
Nothoprocta perdicaria
NCBI taxonomy Id: 30464
Other names: N. perdicaria
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.